PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03813.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 164aa    MW: 18368.6 Da    PI: 9.9023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03813.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-2050100356
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              +kGVr+++ +g+++AeIrdp++ g  +r++lg++ taeeAa+a+++a+ kl+g+
  Rsa1.0_03813.1_g00002.1  50 FKGVRRRP-WGKYAAEIRDPNKHG--ARIWLGTYETAEEAAAAYDRAAFKLRGA 100
                              8*******.**********95544..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3449113IPR001471AP2/ERF domain
CDDcd000182.25E-1449109No hitNo description
PROSITE profilePS5103223.89449107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3149108IPR001471AP2/ERF domain
PRINTSPR003674.3E-105061IPR001471AP2/ERF domain
PfamPF008474.7E-145099IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2350108IPR016177DNA-binding domain
PRINTSPR003674.3E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MQQDLTSYDC SSALDSIRRH LLEDDSESLS SFSSSSSPDL EPTSRRGGNF KGVRRRPWGK  60
YAAEIRDPNK HGARIWLGTY ETAEEAAAAY DRAAFKLRGA KAKLNFPHLI GIDGPEPSRI  120
TKRRLSSPVS CSPVARRRNT DIINLTARVP CLAFRYFYNI DSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2846107263ATERF1
3gcc_A4e-2846107263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601915.16e-92PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ404769e-39ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLA0A0D3DZH96e-92A0A0D3DZH9_BRAOL; Uncharacterized protein
STRINGBra032665.1-P4e-86(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-26ethylene-responsive element binding factor 13